publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2024

  1. ProteinZen: combining latent and SE(3) flow matching for all-atom protein generation
    Alex J. Li, and Tanja Kortemme
    Machine Learning for Structural Biology Workshop, NeurIPS, 2024
    HTML

2023

  1. Neural network‐derived Potts models for structure‐based protein design using backbone atomic coordinates and tertiary motifs
    Alex J. Li, Mindren Lu, Israel Desta, Vikram Sundar, Gevorg Grigoryan, and Amy E. Keating
    Protein Science, Jan 2023
    DOI

2021

  1. TERMinator: A Neural Framework for Structure-Based Protein Design using Tertiary Repeating Motifs
    Alex J. Li, Vikram Sundar, Gevorg Grigoryan, and Amy E. Keating
    Machine Learning for Structural Biology Workshop, NeurIPS, Jan 2021
    DOI HTML